[Devel] [GIT] OpenBioMaps GIT repository, branch master_3.0 updated: some cleaning

git at vocs.unideb.hu git at vocs.unideb.hu
Thu Dec 6 08:48:05 CET 2018


    The project "OpenBioMaps GIT repository":

    The branch, master_3.0 has been updated
       via  11fa55050f1a09037e76c7e92993b26174fe2594 (commit)
      from  c204d14836d2f72e8ed12398ca5c66026c91f1e7 (commit)


- Log -----------------------------------------------------------------
commit 11fa55050f1a09037e76c7e92993b26174fe2594
Author: Bán Miklós <banm at vocs.unideb.hu>
Date:   Thu Dec 6 08:47:34 2018 +0100

some cleaning

-----------------------------------------------------------------------

Summary of changes:
 languages/global_project_translations.csv          | 3898 ++++++++++----------
 supervisor.php                                     |  137 +-
 templates/db_structure/biomaps_data.sql            |   42 +-
 templates/db_structure/biomaps_structure.sql       |   84 +-
 templates/db_structure/gisdata_roles.sql           |    2 +-
 templates/initial/includes/class.Diff.php          |  386 ++
 templates/initial/includes/profile.php             |    3 +
 templates/initial/includes/project_admin.php       |    2 +-
 templates/initial/includes/results_builder.php_old |  811 ----
 templates/initial/includes/system_vars.php.inc     |   14 -
 .../initial/includes/uniq                          |    0
 templates/initial/{includes => public}/cache.php   |    0
 templates/initial/{includes => public}/proxy.php   |    0
 templates/sablon/READ.ME                           |    5 +
 templates/sablon/includes/results_builder.php_old  |  811 ----
 templates/sablon/includes/system_vars.php.inc      |   14 -
 templates/var/www/html/biomaps/.htaccess           |   17 +-
 templates/var/www/html/biomaps/.htpasswd           |    1 +
 templates/var/www/html/biomaps/local_vars.php.inc  |   16 -
 templates/var/www/html/biomaps/oauth/.htaccess     |    1 -
 templates/var/www/html/biomaps/oauth/authorize.php |  129 -
 templates/var/www/html/biomaps/oauth/clientb.php   |    3 -
 .../var/www/html/biomaps/oauth/constans.php.inc    |    1 -
 .../biomaps/oauth/oauth2-server-php/CHANGELOG.md   |  169 -
 .../html/biomaps/oauth/oauth2-server-php/LICENSE   |   21 -
 .../html/biomaps/oauth/oauth2-server-php/README.md |    8 -
 .../biomaps/oauth/oauth2-server-php/composer.json  |   34 -
 .../oauth2-server-php/src/OAuth2/Autoloader.php    |   48 -
 .../ClientAssertionTypeInterface.php               |   15 -
 .../src/OAuth2/ClientAssertionType/HttpBasic.php   |  123 -
 .../src/OAuth2/Controller/AuthorizeController.php  |  393 --
 .../Controller/AuthorizeControllerInterface.php    |   43 -
 .../src/OAuth2/Controller/ResourceController.php   |  111 -
 .../Controller/ResourceControllerInterface.php     |   26 -
 .../src/OAuth2/Controller/TokenController.php      |  295 --
 .../OAuth2/Controller/TokenControllerInterface.php |   32 -
 .../src/OAuth2/Encryption/EncryptionInterface.php  |   11 -
 .../src/OAuth2/Encryption/FirebaseJwt.php          |   47 -
 .../src/OAuth2/Encryption/Jwt.php                  |  173 -
 .../src/OAuth2/GrantType/AuthorizationCode.php     |  100 -
 .../src/OAuth2/GrantType/ClientCredentials.php     |   67 -
 .../src/OAuth2/GrantType/GrantTypeInterface.php    |   20 -
 .../src/OAuth2/GrantType/JwtBearer.php             |  226 --
 .../src/OAuth2/GrantType/RefreshToken.php          |  111 -
 .../src/OAuth2/GrantType/UserCredentials.php       |   83 -
 .../OpenID/Controller/AuthorizeController.php      |  106 -
 .../Controller/AuthorizeControllerInterface.php    |   10 -
 .../OpenID/Controller/UserInfoController.php       |   58 -
 .../Controller/UserInfoControllerInterface.php     |   23 -
 .../OAuth2/OpenID/GrantType/AuthorizationCode.php  |   33 -
 .../OpenID/ResponseType/AuthorizationCode.php      |   60 -
 .../ResponseType/AuthorizationCodeInterface.php    |   27 -
 .../src/OAuth2/OpenID/ResponseType/CodeIdToken.php |   24 -
 .../OpenID/ResponseType/CodeIdTokenInterface.php   |    9 -
 .../src/OAuth2/OpenID/ResponseType/IdToken.php     |  124 -
 .../OpenID/ResponseType/IdTokenInterface.php       |   29 -
 .../OAuth2/OpenID/ResponseType/IdTokenToken.php    |   27 -
 .../OpenID/ResponseType/IdTokenTokenInterface.php  |    9 -
 .../OpenID/Storage/AuthorizationCodeInterface.php  |   37 -
 .../OAuth2/OpenID/Storage/UserClaimsInterface.php  |   38 -
 .../oauth/oauth2-server-php/src/OAuth2/Request.php |  213 --
 .../src/OAuth2/RequestInterface.php                |   16 -
 .../oauth2-server-php/src/OAuth2/Response.php      |  370 --
 .../src/OAuth2/ResponseInterface.php               |   24 -
 .../src/OAuth2/ResponseType/AccessToken.php        |  194 -
 .../OAuth2/ResponseType/AccessTokenInterface.php   |   34 -
 .../src/OAuth2/ResponseType/AuthorizationCode.php  |  100 -
 .../ResponseType/AuthorizationCodeInterface.php    |   30 -
 .../src/OAuth2/ResponseType/JwtAccessToken.php     |  124 -
 .../OAuth2/ResponseType/ResponseTypeInterface.php  |    8 -
 .../oauth/oauth2-server-php/src/OAuth2/Scope.php   |  103 -
 .../src/OAuth2/ScopeInterface.php                  |   40 -
 .../oauth/oauth2-server-php/src/OAuth2/Server.php  |  879 -----
 .../src/OAuth2/Storage/AccessTokenInterface.php    |   64 -
 .../OAuth2/Storage/AuthorizationCodeInterface.php  |   86 -
 .../src/OAuth2/Storage/Cassandra.php               |  480 ---
 .../OAuth2/Storage/ClientCredentialsInterface.php  |   49 -
 .../src/OAuth2/Storage/ClientInterface.php         |   66 -
 .../src/OAuth2/Storage/CouchbaseDB.php             |  331 --
 .../src/OAuth2/Storage/DynamoDB.php                |  540 ---
 .../src/OAuth2/Storage/JwtAccessToken.php          |   88 -
 .../src/OAuth2/Storage/JwtAccessTokenInterface.php |   14 -
 .../src/OAuth2/Storage/JwtBearerInterface.php      |   74 -
 .../src/OAuth2/Storage/Memory.php                  |  381 --
 .../oauth2-server-php/src/OAuth2/Storage/Mongo.php |  392 --
 .../src/OAuth2/Storage/MongoDB.php                 |  380 --
 .../oauth2-server-php/src/OAuth2/Storage/Pdo.php   |  562 ---
 .../oauth2-server-php/src/OAuth2/Storage/Pdo.php__ |  553 ---
 .../src/OAuth2/Storage/PublicKeyInterface.php      |   16 -
 .../oauth2-server-php/src/OAuth2/Storage/Redis.php |  321 --
 .../src/OAuth2/Storage/RefreshTokenInterface.php   |   82 -
 .../src/OAuth2/Storage/ScopeInterface.php          |   46 -
 .../OAuth2/Storage/UserCredentialsInterface.php    |   52 -
 .../src/OAuth2/TokenType/Bearer.php                |  130 -
 .../oauth2-server-php/src/OAuth2/TokenType/Mac.php |   22 -
 .../src/OAuth2/TokenType/TokenTypeInterface.php    |   21 -
 .../oauth2-server-php/test/OAuth2/AutoloadTest.php |   16 -
 .../OAuth2/Controller/AuthorizeControllerTest.php  |  492 ---
 .../OAuth2/Controller/ResourceControllerTest.php   |  176 -
 .../test/OAuth2/Controller/TokenControllerTest.php |  289 --
 .../test/OAuth2/Encryption/FirebaseJwtTest.php     |  102 -
 .../test/OAuth2/Encryption/JwtTest.php             |  102 -
 .../OAuth2/GrantType/AuthorizationCodeTest.php     |  223 --
 .../OAuth2/GrantType/ClientCredentialsTest.php     |  159 -
 .../test/OAuth2/GrantType/ImplicitTest.php         |  143 -
 .../test/OAuth2/GrantType/JwtBearerTest.php        |  360 --
 .../test/OAuth2/GrantType/RefreshTokenTest.php     |  204 -
 .../test/OAuth2/GrantType/UserCredentialsTest.php  |  172 -
 .../OpenID/Controller/AuthorizeControllerTest.php  |  182 -
 .../OpenID/Controller/UserInfoControllerTest.php   |   44 -
 .../OpenID/GrantType/AuthorizationCodeTest.php     |   57 -
 .../OAuth2/OpenID/ResponseType/CodeIdTokenTest.php |  182 -
 .../OAuth2/OpenID/ResponseType/IdTokenTest.php     |  184 -
 .../OpenID/ResponseType/IdTokenTokenTest.php       |   91 -
 .../OpenID/Storage/AuthorizationCodeTest.php       |   95 -
 .../test/OAuth2/OpenID/Storage/UserClaimsTest.php  |   41 -
 .../oauth2-server-php/test/OAuth2/RequestTest.php  |   98 -
 .../oauth2-server-php/test/OAuth2/ResponseTest.php |   17 -
 .../test/OAuth2/ResponseType/AccessTokenTest.php   |  107 -
 .../OAuth2/ResponseType/JwtAccessTokenTest.php     |  160 -
 .../oauth2-server-php/test/OAuth2/ScopeTest.php    |   42 -
 .../oauth2-server-php/test/OAuth2/ServerTest.php   |  684 ----
 .../test/OAuth2/Storage/AccessTokenTest.php        |  102 -
 .../test/OAuth2/Storage/AuthorizationCodeTest.php  |  106 -
 .../test/OAuth2/Storage/ClientCredentialsTest.php  |   28 -
 .../test/OAuth2/Storage/ClientTest.php             |  110 -
 .../test/OAuth2/Storage/DynamoDBTest.php           |   40 -
 .../test/OAuth2/Storage/JwtAccessTokenTest.php     |   41 -
 .../test/OAuth2/Storage/JwtBearerTest.php          |   25 -
 .../test/OAuth2/Storage/PdoTest.php                |   39 -
 .../test/OAuth2/Storage/PublicKeyTest.php          |   29 -
 .../test/OAuth2/Storage/RefreshTokenTest.php       |   41 -
 .../test/OAuth2/Storage/ScopeTest.php              |   53 -
 .../test/OAuth2/Storage/UserCredentialsTest.php    |   40 -
 .../test/OAuth2/TokenType/BearerTest.php           |   58 -
 .../oauth/oauth2-server-php/test/bootstrap.php     |   12 -
 .../oauth/oauth2-server-php/test/cleanup.php       |   15 -
 .../oauth2-server-php/test/config/keys/id_rsa      |   15 -
 .../oauth2-server-php/test/config/keys/id_rsa.pub  |   16 -
 .../oauth2-server-php/test/config/storage.json     |  188 -
 .../test/lib/OAuth2/Request/TestRequest.php        |   61 -
 .../test/lib/OAuth2/Storage/BaseTest.php           |   36 -
 .../test/lib/OAuth2/Storage/Bootstrap.php          |  967 -----
 .../test/lib/OAuth2/Storage/NullStorage.php        |   32 -
 templates/var/www/html/biomaps/oauth/resource.php  |  181 -
 templates/var/www/html/biomaps/oauth/server.php    |   75 -
 templates/var/www/html/biomaps/oauth/token.php     |    7 -
 templates/var/www/html/biomaps/pds.php             |   15 -
 templates/var/www/html/biomaps/pds/.htaccess       |    1 -
 .../var/www/html/biomaps/pds/common_pg_funcs.php   |  407 --
 .../var/www/html/biomaps/pds/constans.php.inc      |    2 -
 templates/var/www/html/biomaps/pds/pds_class.php   | 1370 -------
 templates/var/www/html/biomaps/pds/service.php     |  108 -
 153 files changed, 2530 insertions(+), 22144 deletions(-)
 create mode 100644 templates/initial/includes/class.Diff.php
 delete mode 100644 templates/initial/includes/results_builder.php_old
 delete mode 100644 templates/initial/includes/system_vars.php.inc
 copy downloads/debian/pool/main/o/obm-gekko-update/obm-gekko-update_1.19_all.deb => templates/initial/includes/uniq (100%)
 copy templates/initial/{includes => public}/cache.php (100%)
 copy templates/initial/{includes => public}/proxy.php (100%)
 create mode 100644 templates/sablon/READ.ME
 delete mode 100644 templates/sablon/includes/results_builder.php_old
 delete mode 100644 templates/sablon/includes/system_vars.php.inc
 create mode 100644 templates/var/www/html/biomaps/.htpasswd
 delete mode 100644 templates/var/www/html/biomaps/local_vars.php.inc
 delete mode 100644 templates/var/www/html/biomaps/oauth/.htaccess
 delete mode 100644 templates/var/www/html/biomaps/oauth/authorize.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/clientb.php
 delete mode 120000 templates/var/www/html/biomaps/oauth/constans.php.inc
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/CHANGELOG.md
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/LICENSE
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/README.md
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/composer.json
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Autoloader.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/ClientAssertionType/ClientAssertionTypeInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/ClientAssertionType/HttpBasic.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Controller/AuthorizeController.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Controller/AuthorizeControllerInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Controller/ResourceController.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Controller/ResourceControllerInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Controller/TokenController.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Controller/TokenControllerInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Encryption/EncryptionInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Encryption/FirebaseJwt.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Encryption/Jwt.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/GrantType/AuthorizationCode.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/GrantType/ClientCredentials.php
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 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/GrantType/RefreshToken.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/GrantType/UserCredentials.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/Controller/AuthorizeController.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/Controller/AuthorizeControllerInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/Controller/UserInfoController.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/Controller/UserInfoControllerInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/GrantType/AuthorizationCode.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/ResponseType/AuthorizationCode.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/ResponseType/AuthorizationCodeInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/ResponseType/CodeIdToken.php
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 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/ResponseType/IdTokenInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/ResponseType/IdTokenToken.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/ResponseType/IdTokenTokenInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/Storage/AuthorizationCodeInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/OpenID/Storage/UserClaimsInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Request.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/RequestInterface.php
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 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Server.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/AccessTokenInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/AuthorizationCodeInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/Cassandra.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/ClientCredentialsInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/ClientInterface.php
 delete mode 100755 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/CouchbaseDB.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/DynamoDB.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/JwtAccessToken.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/JwtAccessTokenInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/JwtBearerInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/Memory.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/Mongo.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/MongoDB.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/Pdo.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/Pdo.php__
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/PublicKeyInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/Redis.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/RefreshTokenInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/ScopeInterface.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/src/OAuth2/Storage/UserCredentialsInterface.php
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 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/Encryption/FirebaseJwtTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/Encryption/JwtTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/GrantType/AuthorizationCodeTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/GrantType/ClientCredentialsTest.php
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 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/Controller/AuthorizeControllerTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/Controller/UserInfoControllerTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/GrantType/AuthorizationCodeTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/ResponseType/CodeIdTokenTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/ResponseType/IdTokenTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/ResponseType/IdTokenTokenTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/Storage/AuthorizationCodeTest.php
 delete mode 100644 templates/var/www/html/biomaps/oauth/oauth2-server-php/test/OAuth2/OpenID/Storage/UserClaimsTest.php
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